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List of peptide properties
DFBP ID - DFBPAMIC0156(Antimicrobial peptide)
DFBP ID DFBPAMIC0156
Peptide sequence GRRKRKWLRRIGKGVKIIGGAALDHL
Type Native peptide
Peptide/Function name Antimicrobial peptide, NRC-3
Function-activity relationship
Main bioactivity Antimicrobial activity
Otheir bioactivity Anticancer activity [D1]
Calculated physicochemical properties
Three-letter amino acid Gly-Arg-Arg-Lys-Arg-Lys-Trp-Leu-Arg-Arg-Ile-Gly-Lys-Gly-Val-Lys-Ile-Ile-Gly-Gly-Ala-Ala-Leu-Asp-His-Leu
Single-letter amino acid GRRKRKWLRRIGKGVKIIGGAALDHL
Peptide length 26
Peptide mass
Experimental mass Theoretical mass
2954.00 Da 2955.57 Da c
Net charge +9.5
Isoelectric point (pI) 12.68 c
IC50 N.D
pIC50 N.D
GRAVY -0.5769 c
Hydrophilic residue ratio 57.69% c
Peptide calculator
To calculate the physicochemical properties of bioactive peptide.
Peptide source & Food-borne protein(s) search
Classification Animal
Organism/Source Winter flounder 1a-1, Pleuronectes americanus
Precursor protein Flatfish
Residue position N.D
Precursor protein(s) search
No matching precursor protein found
Link-research
There are no literature reports on the discovery of this sequence in other food-source proteins.
Biological/Functional activity & target protein
Antimicrobial activity

(1) The effective active sequence of the peptide is GRRKRKWLRRIGKGVKIIGGAALDHL-NH2;
(2) anti-Gram+ & Gram-, antifungal
(3) Highly active against A. salmonicida 99-1,  A. salmonicida 97-4,  S. enterica serovar Typhimurium MS7953s, S. enterica serovar Typhimurium 14028s, P. aeruginosa K799, P. aeruginosa Z61, E. coli CGSC4908, E. coli UB1005, E. coli DC2, S. epidermidis C621, MRSA C623, C. albicans C627 (MIC 1-8 uM).

Table 1. Bactericidal activities of selected antimicrobial peptidesa
Peptide code
Concn
(fold MIC)
Pathogen
Maximal killing (% bacteria killed)
Time when maximal killing was reached
NRC-1
1
10
1
10
1
10
99-1
99-1
MS7953s
MS7953s
C. albicans
C. albicans
100
100
100
100
NK
90
40
20
20
10
NA
240
NRC-3
1
10
1
10
99-1
99-1
MS7953s
MS7953s
90
100
97
100
20
5
60
20
NRC-12
1
10
C. albicans
C. albicans
NK
90
NA
240
NRC-13
1
10
K799
K799
95
100
10
5
NRC-13 with NaCl
1
10
K799
K799
5
100
60
20
NRC-13
1
10
1
10
MRSA
MRSA
C. albicans
C. albicans
99
100
25
75
10
5
240
240
NRC-15
1
10
1
10
K799
K799
MRSA
MRSA
60
98
100
100
60
10
20
5
NRC-16
1
10
C. albicans
C. albicans
35
92
240
240
NRC-17
1
10
C. albicans
C. albicans
10
95
240
240
NRC-19
1
10
1
10
MRSA
MRSA
K799
K799
33
90
70
80
60
10
60
40

a The bacterial strains used are A. salmonicida (99-1), S. typhimurium (MS7953s), P. aeruginosa (K799), and MRSA. NK, no killing; NA, not available.

Specific target protein(s) N.D
Taste properties & Structure
Bitterness
Literature report N.D
Bitter prediction tools Non-bitter taste prediction
SMILES NCC(=O)N[C@@]([H])(CCCNC(=N)N)C(=O)N[C@@]([H])(CCCNC(=N)N)C(=O)N[C@@]([H])(CCCCN)C(=O)N[C@@]([H])(CCCNC(=N)N)C(=O)N[C@@]([H])(CCCCN)C(=O)N[C@@]([H])(CC(=CN2)C1=C2C=CC=C1)C(=O)N[C@@]([H])(CC(C)C)C(=O)N[C@@]([H])(CCCNC(=N)N)C(=O)N[C@@]([H])(CCCNC(=N)N)C(=O)N[C@@]([H])([C@]([H])(CC)C)C(=O)NCC(=O)N[C@@]([H])(CCCCN)C(=O)NCC(=O)N[C@@]([H])(C(C)C)C(=O)N[C@@]([H])(CCCCN)C(=O)N[C@@]([H])([C@]([H])(CC)C)C(=O)N[C@@]([H])([C@]([H])(CC)C)C(=O)NCC(=O)NCC(=O)N[C@@]([H])(C)C(=O)N[C@@]([H])(C)C(=O)N[C@@]([H])(CC(C)C)C(=O)N[C@@]([H])(CC(=O)O)C(=O)N[C@@]([H])(CC1=CN=C-N1)C(=O)N[C@@]([H])(CC(C)C)C(=O)O
Preparation method
Mode of preparation Synthesis
Enzyme(s)/starter culture No enzyme
Stability & Cytotoxicity
Peptide stability
Literature report: N.D
EHP-Tool: Enzymatic Hydrolysis Prediction Tool (EHP-Tool)
Peptide cytotoxicity
Literature report: N.D
Prediction: ToxinPred
Additional information
Additional information N.D
Database cross-references
DFBP
[D1] DFBPANCA0406
BIOPEP-UWM [D2] -
APD [D3] -
BioPepDB [D4] -
MBPDB [D5] -
Reference(s)
Primary literature Patrzykat A, Gallant JW, Seo JK, Pytyck J, Douglas SE. Novel antimicrobial peptides derived from flatfish genes. Antimicrob Agents Chemother. 2003 Aug;47(8):2464-70.
PMID: 12878506
Other literature(s) N.D
PubDate 2003
Copyright © 2020. Record / license number: Chongqing ICP No. 2000214