Descriptors of DPPS for 20 coded amino acids.
AA Abbr. V1 a V2 V3 V4 V5 V6 V7 V8 V9 V10
Ala A -1.02 -2.88 -0.56 0.36 -6.15 -1.68 0.04 -2.51 -1.94 -0.01
Arg R 1.99 4.13 -4.41 -1.02 4.78 3.04 -9.06 6.71 4.41 0.07
Asn N -2.19 1.86 0.38 -0.13 -2.30 1.41 -5.71 -1.11 1.73 -0.19
Asp D -6.60 3.32 1.61 0.36 -3.25 1.95 -7.36 0.14 1.24 -0.15
Cys C 0.21 1.12 3.42 -0.68 -2.27 -1.22 3.11 -2.98 -1.70 1.57
Gln Q -0.47 1.16 -0.57 0.69 0.39 1.93 -5.46 -0.84 1.93 0.85
Glu E -5.39 0.65 -0.98 1.39 -0.23 2.51 -6.84 -0.68 1.41 1.28
Gly G -2.86 -5.00 -2.97 0.53 -11.45 1.89 -2.11 -3.99 -2.16 -0.76
His H 0.73 2.68 -0.66 -1.89 1.60 1.13 -1.94 -0.11 0.44 0.15
Ile I 1.91 -3.13 0.01 1.14 2.70 -4.55 8.93 0.18 -1.10 -0.76
Leu L 1.64 -2.57 0.00 1.35 2.62 -2.65 7.72 0.05 -1.03 -1.81
Lys K 2.47 1.54 -4.28 -0.86 2.77 2.06 -6.18 2.05 2.19 -1.65
Met M 1.93 -0.01 1.21 0.99 2.79 -0.56 5.33 -0.87 -0.99 -1.09
Phe F 2.68 0.84 2.22 0.71 5.02 -0.30 8.60 1.13 -1.40 -0.28
Pro P 0.45 -2.89 1.77 -5.81 -3.79 -0.61 0.70 1.21 -1.67 1.79
Ser S -1.76 -0.19 1.06 -0.69 -5.72 0.14 -4.14 -2.42 -0.13 0.69
Thr T -0.55 -0.66 0.13 -0.31 -2.76 -1.56 -2.46 -2.12 0.17 0.08
Trp W 3.88 1.78 1.68 2.00 9.31 0.89 7.53 4.27 -0.23 -1.42
Tyr Y 2.10 1.26 1.15 0.91 5.90 0.74 3.71 3.32 0.25 1.33
Val V 0.83 -3.02 -0.22 0.97 0.05 -4.55 5.61 -1.41 -1.44 0.30
a The DPPS descriptors for 20 amino acids are derived by PCA. The electronic properties of the amino acid are characterized by V1-V4, steric properties by V5 and V6, hydrophobic properties by V7 and V8, and hydrogen bond contributions by V9 and V10.
References [1] F. Tian, L. Yang, F. Lv, Q. Yang, P. Zhou, In silico quantitative prediction of peptides binding affinity to human MHC molecule: an intuitive quantitative structure-activity relationship approach, Amino Acids, 36 (2009) 535-554.