Descriptors of VSTV for 20 coded amino acids. |
AA |
Abbr. |
VSTV1 a |
VSTV2 |
VSTV3 |
Ala |
A |
-1.33 |
0.41 |
-0.10 |
Arg |
R |
1.22 |
-0.55 |
2.31 |
Asn |
N |
-0.20 |
1.05 |
0.61 |
Asp |
D |
-0.21 |
1.34 |
0.64 |
Cys |
C |
-1.02 |
-0.32 |
-0.69 |
Gln |
Q |
0.20 |
0.41 |
1.02 |
Glu |
E |
0.18 |
0.71 |
1.04 |
Gly |
G |
-1.66 |
0.78 |
0.24 |
His |
H |
0.61 |
0.93 |
-0.80 |
Ile |
I |
-0.12 |
-1.27 |
-0.38 |
Leu |
L |
-0.17 |
-1.24 |
-0.02 |
Lys |
K |
0.39 |
-1.42 |
1.46 |
Met |
M |
-0.24 |
-2.48 |
-0.28 |
Phe |
F |
1.07 |
0.10 |
-0.36 |
Pro |
P |
-0.54 |
-0.33 |
-1.73 |
Ser |
S |
-0.94 |
0.90 |
0.03 |
Thr |
T |
-0.58 |
0.51 |
-0.30 |
Trp |
W |
2.42 |
0.49 |
-1.87 |
Tyr |
Y |
1.51 |
0.56 |
-0.11 |
Val |
V |
-0.58 |
-0.57 |
-0.71 |
a The 3 principal component scores as VSTV descriptors are derived from PCA on a matrix of 25 structural and topological variables of 20 coded amino acids. |
References |
[1] H. Mei, Y. Zhou, L. L. Sun, Z. L. Li, A new descriptor of amino acids and its application in peptide QSAR, Acta Phys.-Chim. Sin., 20 (2004) 821-825. |
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